Most standard whole slide formats like NDPI and SVS incorporate JPEG compression. Also, even with compression, there will often be a dramatic increase in file size if the original image was JPEG compressed. OME TIFF: Restricted to one file type, unlike the first option, but now you can create pyramidal images, which allows you to export whole slide images. If you change the overlay (like turning detection visibility off) the resulting image will reflect your changes.
#PYXEL EDIT EXPORT TILESET AS SEPERATE PLUS#
Rendered RGB (with overlays): The original image plus the overlay as it is currently visible. Often not possible without downsampling if you are using whole slide images. Original pixels: Output the image in a variety of formats. These functions will either attempt to use the whole currently open image, or, if an annotation is selected, the bounding box of that annotation.
#PYXEL EDIT EXPORT TILESET AS SEPERATE FULL#
The “ Current viewer content” ( Orange outline) content includes the full image overlay including the scale bar and other Viewer components, while the “ Current viewer content (SVG)” ( Magenta outline ) only includes objects and the original image. “ Main window screenshot” ( Green outline on the right) is the entire QuPath window along with whatever sub menus or dialogs might be open in front of it, while “ Main window content” ( Blue outline) only includes the full QuPath interface without any other dialog boxes.
These four options take a quick snapshot of various regions of QuPath.
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